Posts tagged science

Never Tell Me The Odds

image

(image via 4 Wheel Drive)

Listening: Soundtrack for Star Wars: Return of the Jedi. Also, I did re-start Chaos by James Gleick. I listened to that on the way to work this morning.

Reading: I put away the Chemistry for Dummies and picked up Algebra Survival Guide: A Conversational Guide for the Thoroughly Befuddled. I’m not very good at math so I’ve decided just to work through some high-school level books. I took a math course in university but for some reason it just doesn’t stick. I’m also reading Popular Mechanics (Apr 2013).

Doing: Online shopping. Now before you get all mad at me for breaking my promise not to buy unnecessary things, I have an excuse. I had some Chapters gift certificates to use so I bought some books with them. And okay, the Pottery Barn Star Wars sheeting (for my camp room) was completely unnecessary; I did it because I don’t have a credit card and found a set on ebay that I could buy through Paypal.

I regret nothing.

Do you want to know what books I bought? Here’s the list:

  1. 62 Projects To Make With A Dead Computer. I have a few dead computers in my office. I think I can make something with them.
  2. Wookiee Pies, Clone Scones, and Other Galactic Goodies. For all my Star Wars baking needs, of course.
  3. MAKE: Electronics: Learning Through Discovery. I like things that make noise, light up, and do stuff. I’m a nerd.
  4. The Book of Perfectly Perilous Math. I’m working through some early high-school level math books so I thought this would be fun.
  5. Knits of Tomorrow: Toys and Accessories for your Retro-Future Needs. A retro knitting book that looks really cool! I can’t wait to knit the cassette tape design.
  6. Top Secret: A Handbook Of Codes, Ciphers And Secret Writing. Another easy book for young people. Since I’m not very good at this sort of thing, it’s perfect for me.
  7. Creating Characters with Personality. I made a small goal to learn some cartooning this year; I like retro and old-school styles so this seemed to fit the bill.
  8. Humongous Book Of Cartooning. Just like the book I just listed, this also has a retro feel so exactly what I’m looking for.
  9. The Star Wars Craft Book. I like Star Wars and I like crafting.
  10. The Creative License. Another creativity book to add to my collection. I think I used to own it but misplaced it a few years ago.

Eating:  I had carrots, and a cantaloupe protein smoothie for lunch. It was delicious.

Drinking:  Coffee, water, and some ginger-lemon tea.

Wearing: jeans and my “You’re So Obtuse” t-shirt from Thinkgeek.

Feeling:  I’m alright I guess. It’s a quiet day, not much going on. I feel a lot better now that I’m normalized my blood sugar again. Definitely feeling carb-shy.

Weather: *le sigh* Cloudy and 1C with some snow and rain mixed throughout the day. It was snowing this morning…

Wanting: to finish my Ultimate Nerdy Bucket List. I have 382 items on it so far and I’m only half way there :)

Needing: To vent! Read on.

Thinking: that some men need really stop talking. No guy ever says to his buddy, “You only spend an hour a day in your vehicle so you don’t need a custom stereo. The stock system will be fine for your needs.” Or how about, “You don’t really need to buy a truck since you only really require one about twice a year. You should consider a Honda Civic.” And also; “you don’t need a home theatre system and 80 inch flat-screen TV. You’re so busy you won’t get much time to use it. Just watch movies on your tablet”.

But if you’re a woman, a guy will definitely say, “Tell her she doesn’t need a Jeep Rubicon. It has all these features she’s never going to use anyways. Tell her to be sensible, just get something more basic. Anything more would be a waste of money.”

Apparently, women aren’t allowed to own cool things for the sake of them being cool. They should be sensible and just stick to easy and basic things. Well I call shenanigans! If I want to spend my money on a Jeep Rubicon Unlimited then that’s what I’m going to do. I’m never basic or boring, and I’m only sensible enough not to get killed.

Enjoying: Typing out that mini-rant. I needed to vent. Thanks for reading.

jtotheizzoe:

Wringing out a Washcloth on the ISS

Space Canadian Chris Hadfield continues his quest for interplanetary internet dominance with this incredible experiment submitted by two Nova Scotia high school students: Kendra Lemke and Meredith Faulkner

They wanted to know what would happen if you wrung out a washcloth on the ISS? I won’t spoil the ending for you, but suffice to say it’s about the coolest thing I’ve ever seen.

I love how he doesn’t even have to hold the mic. Great job, Kendra and Meredith! For science!

So cool!

brookhavenlab:

Renate Chasman was probably thinking about new ways to revolutionize particle accelerators when this photo was taken.
She was only in her early 40s when she and her collaborator, Ken Green, changed the way science in their field was done. Their ingenious Chasman-Green lattice manipulated accelerated electrons to produce the brightest x-rays ever created up to that time.  Completed in the 1970s, their design was first used at Brookhaven’s National Synchrotron Light Source, and then went on to be incorporated into future synchrotron light source facilities all around the world.
Chasman was one of the few female accelerator physicists of her time, and she has an interesting story. She was born in Berlin in 1932 and moved with her family to Holland and then Sweden after the Nazis came to power. As a child in Sweden, she would sometimes travel the three miles to school on skis. She studied nuclear physics at the Hebrew University of Jerusalem, then went on to work at Columbia University and Yale University, and finally she came to Brookhaven National Lab, where she found an interest in accelerator technology and ultimately revolutionized the field.
Just a few years after her profound contribution to science, this renowned physicist passed away in 1977 at the tragically young age of 45, but her legacy of innovation continues here at the Lab. Brookhaven Women in Science offers a scholarship in Chasman’s name that has promoted the advancement of women in scientific and technical careers for 27 years.

brookhavenlab:

Renate Chasman was probably thinking about new ways to revolutionize particle accelerators when this photo was taken.

She was only in her early 40s when she and her collaborator, Ken Green, changed the way science in their field was done. Their ingenious Chasman-Green lattice manipulated accelerated electrons to produce the brightest x-rays ever created up to that time.  Completed in the 1970s, their design was first used at Brookhaven’s National Synchrotron Light Source, and then went on to be incorporated into future synchrotron light source facilities all around the world.

Chasman was one of the few female accelerator physicists of her time, and she has an interesting story. She was born in Berlin in 1932 and moved with her family to Holland and then Sweden after the Nazis came to power. As a child in Sweden, she would sometimes travel the three miles to school on skis. She studied nuclear physics at the Hebrew University of Jerusalem, then went on to work at Columbia University and Yale University, and finally she came to Brookhaven National Lab, where she found an interest in accelerator technology and ultimately revolutionized the field.

Just a few years after her profound contribution to science, this renowned physicist passed away in 1977 at the tragically young age of 45, but her legacy of innovation continues here at the Lab. Brookhaven Women in Science offers a scholarship in Chasman’s name that has promoted the advancement of women in scientific and technical careers for 27 years.

martinlkennedy:

Future was a 1970s magazine that mixed science fact, speculation and fiction and often featured amazing artwork commissioned just for the magazine. But it lost its way and folded in 1981.

martinlkennedy:

Future was a 1970s magazine that mixed science fact, speculation and fiction and often featured amazing artwork commissioned just for the magazine. But it lost its way and folded in 1981.

explore-blog:

Why yellow isn’t yellow – fascinating primer on how screens change the way our color vision works. Complement with the science of why the color pink doesn’t exist and this 1938 black-and-white film on how color vision works.

( Coudal)

I already knew that but it’s a cool video :) So watch it!

My day so far has been quiet. My tonsils are swollen because I’m sick so I’ve been alternating between coffee; and sweet, milky tea.

Tonight is for knitting and just staying in. Obviously no gym until I feel better. That’s fine by me. We’ve had a lot of snow fall the past few days so it’s just safer to stay off of the roads. It’s snowing as I type this actually, so I would prefer just to curl up and get some rest.

I’m currently reading, The Scientists: A History of Science Told Through the Lives of Its Greatest Inventors, by John Gribbins. I’ve also caught up with The Walking Dead and so far, I’m really enjoying it. I’ve always been a fan of zombie, biopunk, or post-apocalyptic fiction. I’ve always found it more compelling than vampires or serial killers. Someday the zombie-trend is going to die out so I’m going to get in as much of it as I can before it gets scarce.

No one can really feel at home in the modern world and judge the nature of its problems— and the possible solutions to those problems— unless one has some intelligent notion of what science is up to. Furthermore, initiation into the magnificent world of science brings great aesthetic satisfaction, inspiration to youth, fulfillment of the desire to know, and a deeper appreciation of the wonderful potentialities and achievements of the human mind.

I was cleaning out my backpack last weekend and $150 worth of Chapters gift certificates fell out onto my bed. I had bought them in case I needed to buy supplement material for any of my classes at college. I didn’t end up using them, so they just sat in my backpack for awhile. I’ve been trying to decide what to buy with them all week and lo’ I’ve believe I scored a mighty fine haul.

  1. Archimedes to Hawking: Laws of Science and the Great Minds Behind Them by Clifford Pickover
  2. The Scientists: A History of Science Told Through the Lives of Its Greatest Inventors by John Gribbin (Author), Adam Hook (Illustrator)
  3. The Lunar Men: Five Friends Whose Curiosity Changed the World by Jenny Uglow
  4. London: The Biography by Peter Ackroyd
  5. A Wicked Company: The Forgotten Radicalism of the European Enlightenment by Philipp Blom
  6. The World of the Paris Café: Sociability among the French Working Class, 1789-1914 by W. Scott Haine
  7. The Coffee House: A Cultural History by Markman Ellis
  8. Head First HTML and CSS by Elisabeth Robson and Eric Freeman
I want to make one of my own.

I want to make one of my own.

fuckyeahmolecularbiology:

6 Things I’ll Bet You Didn’t Know Are In Your DNA
In biology, DNA is presented as a neat, orderly double helix comprised of nucleotides, which determine our genotype and - along with environmental factors - our phenotype. Unfortunately, the DNA replicating in our cells right now isn’t comprised of the perfect right-handed spirals that we picture as the “building blocks of life” - in the words of Cracked.com, “[it] is more like an old scrapbook that someone has torn up, pasted back together, filled with old newspaper clippings about murder and then taken into the bathroom with them.”
So let’s take a look at the creepiest of what scientists think 98% of our DNA - as in, not the approximately 2% that codes for useful proteins - is made up of.
Ancient Viruses. I’ve blogged about this before, but it’s so cool I’ll mention it again. While a “normal” virus works by invading a host cell and using cellular machinery to reproduce, retroviruses actually mix their own genetic material into the cell they’re invading. Scientists believe that endogenous retroviruses picked up by our distant ancestors found their way into the sex organs, and the new virus-hybrid DNA was passed onto offspring - which ultimately evolved into us, racking up virus-laden DNA over thousands of years. As a result, scientists estimate we now have 100,000 of these microscopic gate-crashers cluttering up our DNA - making up a whopping 40% of our entire genome. (Edit: As jtotheizzoe pointed out, viral DNA itself only accounts for about 8-10% of the genome, although that’s probably underestimated since a lot of it is hopelessly degraded. The 40% number comes from retrotransposons, like LINE elements, which are not viruses - although they may be ancestors of retroviruses.) Even more eerily, new research suggests there could be a correlation between unexpectedly high levels of a particular endogenous retrovirus and schizophrenia.
“Dead” genes. Our DNA is also full of evolutionary relics that have not yet been completely edited out - so called “junk DNA”, or “dead genes.” There’s just one problem with that name, however - the genes aren’t actually dead. A common form of muscular dystrophy, FSHD, is caused by a “dead” gene present in all humans. But it’s only “dead” because it’s missing one specific sequence that allows it to be successfully transcribed; all it takes is one tiny mutation, and the gene is fully expressed. If you thought that was just a fluke, think again: A gene thought to put people at risk for Crohn’s disease was resurrected after 25 million years, and by what? Another retrovirus, of course!
Neanderthal DNA. How on earth is 1-4% of our modern genome the same as that of a Neanderthal? The obvious answer is, “Oh, it hasn’t been edited out by natural selection yet”…except for, awkwardly enough, that same 1-4% is only found in people with European and Asian descent, and not those descending from Sub-Saharan Africa. Scientists’ hypothesis? Some of our early ancestors got it on in the Middle East 600,000 years ago after leaving Africa. Neanderthals weren’t our only inter-species coital experience, either - in 2010, researchers discovered another species, the Denisovans, and we apparently got funky with them, too.
Your family tree. And, unfortunately, not always in a good way. A study in Sweden revealed a strange pattern in a rural community that had gone through periods of both famine and abundance in the 19th century. The study found that the grandsons of men who’d had childhoods coinciding with abundant years had a life expectancy of 32 years less than the grandsons of those who had experienced famine, with the grandsons’ earlier deaths caused mainly by diabetes and heart disease.

Insect-spread parasites. The assassin bug of South America is well known for sucking the blood of sleeping victims while pooping on their faces at the same time. While this is gross, it doesn’t have any affect on our DNA - until we scratch the bite. That causes the bug faeces to enter our system, carrying the parasite T. cruzi - the cause of Chagas’ disease. Being a discerning and ever-questioning scientist, you’re probably thinking: Hey, wait, that’s not right! That’s not genetic! The scary part is it might be. Researchers who deliberately infected chicken eggs with T. cruzi and then tested the offspring of the infected chickens that emerged found that not only did those chickens have the parasite DNA, but so did their offspring, and so on.


Your Long-Lost Twin. In very rare cases, one of two twins in the womb will end up effectively killing the other in order to obtain more resources and nutrients for itself. In even rarer cases, the surviving twin can end up absorbing its dead twin’s DNA - a condition known formally as “chimerism.” In 2002, a woman named Lydia Fairchild submitted DNA tests for her three children as part of a welfare claim, only to have the results prove that genetically, she wasn’t the mother. Since DNA is considered the gold standard of medical evidence, she was accused of somehow stealing the children, even after the poor woman gave birth to another “nonrelated” child right in front of a social worker. Finally, more extensive testing unlocked the mystery: Her ovaries had a different set of DNA than her bloodstream. In other words, she’d given birth to her dead sister’s children. Hers wasn’t an isolated case, either: a woman getting typed for a kidney transplant found out that two of her sons belonged to a dead sibling, while a teenage boy being treated for an undescended testicle was found to possess an ovary from his dead sister.

Image: Computer simulation of DNA unwinding.

In the immortal words of Spock,”fascinating”.

fuckyeahmolecularbiology:

6 Things I’ll Bet You Didn’t Know Are In Your DNA

In biology, DNA is presented as a neat, orderly double helix comprised of nucleotides, which determine our genotype and - along with environmental factors - our phenotype. Unfortunately, the DNA replicating in our cells right now isn’t comprised of the perfect right-handed spirals that we picture as the “building blocks of life” - in the words of Cracked.com, “[it] is more like an old scrapbook that someone has torn up, pasted back together, filled with old newspaper clippings about murder and then taken into the bathroom with them.”

So let’s take a look at the creepiest of what scientists think 98% of our DNA - as in, not the approximately 2% that codes for useful proteins - is made up of.

  1. Ancient Viruses. I’ve blogged about this before, but it’s so cool I’ll mention it again. While a “normal” virus works by invading a host cell and using cellular machinery to reproduce, retroviruses actually mix their own genetic material into the cell they’re invading. Scientists believe that endogenous retroviruses picked up by our distant ancestors found their way into the sex organs, and the new virus-hybrid DNA was passed onto offspring - which ultimately evolved into us, racking up virus-laden DNA over thousands of years. As a result, scientists estimate we now have 100,000 of these microscopic gate-crashers cluttering up our DNA - making up a whopping 40% of our entire genome. (Edit: As jtotheizzoe pointed out, viral DNA itself only accounts for about 8-10% of the genome, although that’s probably underestimated since a lot of it is hopelessly degraded. The 40% number comes from retrotransposons, like LINE elements, which are not viruses - although they may be ancestors of retroviruses.) Even more eerily, new research suggests there could be a correlation between unexpectedly high levels of a particular endogenous retrovirus and schizophrenia.
  2. “Dead” genes. Our DNA is also full of evolutionary relics that have not yet been completely edited out - so called “junk DNA”, or “dead genes.” There’s just one problem with that name, however - the genes aren’t actually dead. A common form of muscular dystrophy, FSHD, is caused by a “dead” gene present in all humans. But it’s only “dead” because it’s missing one specific sequence that allows it to be successfully transcribed; all it takes is one tiny mutation, and the gene is fully expressed. If you thought that was just a fluke, think again: A gene thought to put people at risk for Crohn’s disease was resurrected after 25 million years, and by what? Another retrovirus, of course!
  3. Neanderthal DNA. How on earth is 1-4% of our modern genome the same as that of a Neanderthal? The obvious answer is, “Oh, it hasn’t been edited out by natural selection yet”…except for, awkwardly enough, that same 1-4% is only found in people with European and Asian descent, and not those descending from Sub-Saharan Africa. Scientists’ hypothesis? Some of our early ancestors got it on in the Middle East 600,000 years ago after leaving Africa. Neanderthals weren’t our only inter-species coital experience, either - in 2010, researchers discovered another species, the Denisovans, and we apparently got funky with them, too.
  4. Your family tree. And, unfortunately, not always in a good way. A study in Sweden revealed a strange pattern in a rural community that had gone through periods of both famine and abundance in the 19th century. The study found that the grandsons of men who’d had childhoods coinciding with abundant years had a life expectancy of 32 years less than the grandsons of those who had experienced famine, with the grandsons’ earlier deaths caused mainly by diabetes and heart disease.
  5. Insect-spread parasites. The assassin bug of South America is well known for sucking the blood of sleeping victims while pooping on their faces at the same time. While this is gross, it doesn’t have any affect on our DNA - until we scratch the bite. That causes the bug faeces to enter our system, carrying the parasite T. cruzi - the cause of Chagas’ disease. Being a discerning and ever-questioning scientist, you’re probably thinking: Hey, wait, that’s not right! That’s not genetic! The scary part is it might be. Researchers who deliberately infected chicken eggs with T. cruzi and then tested the offspring of the infected chickens that emerged found that not only did those chickens have the parasite DNA, but so did their offspring, and so on.
  6. Your Long-Lost Twin. In very rare cases, one of two twins in the womb will end up effectively killing the other in order to obtain more resources and nutrients for itself. In even rarer cases, the surviving twin can end up absorbing its dead twin’s DNA - a condition known formally as “chimerism.” In 2002, a woman named Lydia Fairchild submitted DNA tests for her three children as part of a welfare claim, only to have the results prove that genetically, she wasn’t the mother. Since DNA is considered the gold standard of medical evidence, she was accused of somehow stealing the children, even after the poor woman gave birth to another “nonrelated” child right in front of a social worker. Finally, more extensive testing unlocked the mystery: Her ovaries had a different set of DNA than her bloodstream. In other words, she’d given birth to her dead sister’s children. Hers wasn’t an isolated case, either: a woman getting typed for a kidney transplant found out that two of her sons belonged to a dead sibling, while a teenage boy being treated for an undescended testicle was found to possess an ovary from his dead sister.

Image: Computer simulation of DNA unwinding.

In the immortal words of Spock,”fascinating”.

A Good Day

the night and and the milky way
(The Night and the Milky Way © Wilson Lee)

Guinness Stout Brownies
(Guinness Stout Brownies at Blondie’s Cakes & Things)


(The sound the universe makes: Janna Levin on TED.com)

I’ve been listening to How the Universe Got Its Spots: Diary of a Finite Time in a Finite Space by Janna Levin on audiobook. The content is solid but I can barely stand to listen to the narrator, Christine Williams.

Although a book of science, it’s written as a set of personal letters. This audiobook needed to be read by a woman with a softer and almost wistful quality to her voice. Instead, Christina Williams narrates it with a sharp, almost tomboyish edge (think Jodi Foster) which is jarring and doesn’t match the personal content. The topics of topology and a finite Universe are fascinating. I wanted to be drawn in and enchanted but I wasn’t, and that’s too bad.

I have, however, enjoyed a couple Dark ‘n’ Stormies thanks to my ability to hunt down a bottle of Gosling’s Black Seal Rum. I also snuck in a bottle of Young’s Double Chocolate Stout. Both were delicious and I’m only sad I don’t have more bottles of the stout.

I’ve also spent my day listening to Ghosts I-IV, and a collection of instrumental music I received from the boys at hppodcraft.com for making a donation. Both are fantastic and compliment a rainy day full of reading.

I did finish the first season of Haven. I’m on the fence about it but will speak on it another day. I’m off to get in a couple more hours of reading before I inevitably and blissfully fall asleep.

This Dark and Stormy Night

Stack of Good Books

Dark 'n' Stormy
(Dark ‘n’ Stormy photo © Dreamy Dish)

I’m usually content with a glass of good beer or red wine. I guess it’s because there is an organic earthiness to each that I find appealing. That probably explains why I love coffee and tea as well; because of the earthy flavours and qualities.

I also like scotch and rum and am very fond of a drink called the Dark ‘n’ Stormy which combines ginger beer and Gosling’s Black Seal Rum. The rum is a “black rum distilled from molasses”. Molasses and ginger beer also have that earthy flavour I enjoy so it’s no surprise the Dark ‘n’ Stormy is my favourite mixed drink. Here is the recipe from the Ministry of Rum (which is a great site and I encourage you, dear reader, to visit). I find this is my favourite recipe due to the addition of a bit of lime juice.

Dark and Stormy
Method: build in glass

* 50ml Gosling’s Black Seal Rum
* 10ml lime juice
* dash gomme syrup
* top with ginger beer

I don’t make my Dark ‘n’ Stormies in tall glasses like in the picture above. I prefer to use the traditional 8 oz highball glass. I also tend to call my Dark ‘n’ Stormy a Foggy & Wet because I have to substitute for the Gosling’s Black Seal Rum since I can never seem to buy it locally.

I know it’s weird I’ve talked a lot about alcohol the past few days. I don’t drink very often but usually around this time of year (midsummer) and all the way through to Yule, I find myself drinking more. I don’t know why, but I don’t really like drinking alcohol in the winter except for warm drinks like ciders or spiked coffees.

Onto other lovely things. I created a small list of books I want to finish reading before the new year. I want to get through the stack of books in my makeshift queue so I can stop feeling easily distracted and lazy. Here is my reading list:
  1. Quicksilver by Neal Stephenson
  2. The Confusion by Neal Stephenson
  3. The System of the World by Neal Stephenson
  4. The Disappearing Spoon by Sam Kean
  5. Philosophical Breakfast Club by Laura Snyder
  6. Sphere by Michael Crichton
  7. State of Fear by Michael Crichton
  8. Pirate Latitudes by Michael Crichton
  9. Under the Dome by Stephen King
  10. Tommyknockers by Stephen King
  11. Cell by Stephen King
  12. The Soul of the Night: An Astronomical Pilgrimage by Chet Raymo
  13. The Planets by Dava Sobel (I think she’s fantastic. I am such a Dava Sobel fangirl. And yes, the book is the same one I’ve listened to a dozen times in audio format.)

Diversions

Salted Caramel and Chocolate Stout Whoopie Pies
(Salted Caramel and Chocolate Stout Whoopie Pies at Endless Simmer)

I often find myself easily distracted. It’s hard for me to resist a well-crafted hyperlink. I started out the morning checking on my Amazon order status. They have The Universe DVD’s, all 5 seasons, on sale for $65. Even though I find the show more suited to Americans raised on Spike TV and TNT, it does offer some scientific value. Once you get past the ‘everything in the Universe is trying to kill us’ emphasize, the series has something to teach you.

I also ordered:

  1. Earth: The Biography
  2. Nova: Telescope - Hunting the Edge of Space
  3. The Story of Math
  4. Inside the Milky Way (2010)
  5. How the Universe Works

I figured those should keep me entertained while I knit my dad’s sweater. I have a long stretch of 8 weeks at camp between my days off in August and Thanksgiving in October.

I thought about Thanksgiving and remembered that I should tell fellow beer drinkers about Canadian Beer News. It helped me find Sherbrooke Liquor’s Heartstopper Hot Chocolate Stout which I decided would pair nicely with Spiced Mayan Chocolate Coated Walnuts.

Of course then I found Howe Sound Beer’s (@howesoundbeer) Pumpkineater ale and Phillips Brewing Company’s Longboat Chocolate Porter. At that point I was wishing I was home in BC where I am able to taste such delights. Finally, I found a recipe for Guinness and Bailey’s Irish Cream Cupcakes. I figure cupcakes are OK and long as they’re made with booze.

This is how I get distracted. From science to beer to beer filled desserts I’ll probably never eat but which I can still appreciate. If I do try one of the recipes it will probably be the Salted Caramel and Chocolate Stout Whoopie Pies. I love salted caramel and chocolate stout so it’s a win all around.